MLOC_22352 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6801531.385451.347341.27927
LEAShoots from the seedlings (10 cm shoot stage)2.12111.45741.089971.44665
INF1Young developing inflorescences (5mm)4.819285.339946.586634.85858
INF2Developing inflorescences (1-1.5 cm)6.53296.291867.916427.86303
ROORoots from the seedlings (10 cm shoot stage)0.9555011.054830.6511351.39599
NODDeveloping tillers at six leaf stage, 3rd internode1.306032.07183.059657.82363
CAR5Developing grain, bracts removed (5 DPA)3.084283.176383.48743.38595
CAR15Developing grain, bracts removed (15 DPA)0.8568721.114131.710182.67547



CDS Structure of MLOC_22352






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22352.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_22352.1CUST_11741_PI427708083AvailableAvailablecontig_1605752 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g04850.3 +1 1e-44 157 115/133 (86%) 13107.m09971 protein pre-mRNA-processing factor 31, putative, expressed
TAIR PP10 AT1G60170.1 +1 1e-31 119 100/145 (69%) | Symbols: emb1220 | pre-mRNA processing ribonucleoprotein binding region-containing protein | chr1:22193008-22195177 FORWARD LENGTH=485