MLOC_22339 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains50.783362.849657.585470.9149
LEAShoots from the seedlings (10 cm shoot stage)86.1258125.11968.564986.0807
INF1Young developing inflorescences (5mm)14.612620.151419.377818.0836
INF2Developing inflorescences (1-1.5 cm)37.15133.643330.999644.0111
ROORoots from the seedlings (10 cm shoot stage)72.193351.219278.309281.5408
NODDeveloping tillers at six leaf stage, 3rd internode77.910970.886.1851240.878
CAR5Developing grain, bracts removed (5 DPA)52.203454.551642.422358.0096
CAR15Developing grain, bracts removed (15 DPA)9.762347.356377.0117421.9193



CDS Structure of MLOC_22339






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22339.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_22339.1CUST_11740_PI427708083AvailableAvailablecontig_1605611 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g02300.1 -2 5e-17 77 37/40 (93%) 13105.m00194 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G02560.1 -2 4e-17 76 36/40 (90%) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153