MLOC_22250 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.09157.222047.008186.11649
LEAShoots from the seedlings (10 cm shoot stage)7.751946.399593.802983.96272
INF1Young developing inflorescences (5mm)12.448912.057311.38357.75108
INF2Developing inflorescences (1-1.5 cm)9.515228.384079.101847.6659
ROORoots from the seedlings (10 cm shoot stage)5.542595.98759.763345.11899
NODDeveloping tillers at six leaf stage, 3rd internode8.134572.612454.718826.69493
CAR5Developing grain, bracts removed (5 DPA)5.339475.128224.927463.77368
CAR15Developing grain, bracts removed (15 DPA)1.055490.8736531.064921.79163



CDS Structure of MLOC_22250






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22250.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357842NoneNoneNoneNone
MLOC_22250.1CUST_164_PI427708083AvailableAvailablecontig_160441 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g02730.1 -3 3e-13 71 33/41 (80%) 13112.m00216 protein histidine triad family protein, putative
TAIR PP10 AT5G58240.2 -3 6e-11 63 28/34 (82%) | Symbols: FHIT | FRAGILE HISTIDINE TRIAD | chr5:23558349-23559171 REVERSE LENGTH=160