MLOC_22225 FPKM values

FPKM by TreatmentFPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.


Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.4999513.07888.710010
LEAShoots from the seedlings (10 cm shoot stage)8.435389.818694.030770
INF1Young developing inflorescences (5mm)5.33367.906533.477960
INF2Developing inflorescences (1-1.5 cm)12.5529.261873.86120
ROORoots from the seedlings (10 cm shoot stage)10.655612.119720.25180
NODDeveloping tillers at six leaf stage, 3rd internode7.1822703.148370
CAR5Developing grain, bracts removed (5 DPA)133.72121.30879.22860
CAR15Developing grain, bracts removed (15 DPA)55189.359022.150766.50



CDS Structure of MLOC_22225






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22225.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_22225.1CUST_10055_PI427708080AvailableNonecontig_160414 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g32550.1 -2 1e-27 107 54/134 (40%) 13106.m03361 protein THION14 - Plant thionin family protein precursor, putative, expressed
TAIR PP10 AT1G72260.1 -2 4e-17 77 44/119 (37%) | Symbols: THI2.1, THI2.1.1 | thionin 2.1 | chr1:27198803-27199358 REVERSE LENGTH=134