MLOC_2222 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.12349.7535711.625112.0487
LEAShoots from the seedlings (10 cm shoot stage)15.786212.975612.431712.1795
INF1Young developing inflorescences (5mm)18.931312.832416.009114.2486
INF2Developing inflorescences (1-1.5 cm)22.707615.6415.327320.0094
ROORoots from the seedlings (10 cm shoot stage)9.840198.996811.691911.6093
NODDeveloping tillers at six leaf stage, 3rd internode8.483049.0360710.77427.5194
CAR5Developing grain, bracts removed (5 DPA)13.2115.06316.508414.9591
CAR15Developing grain, bracts removed (15 DPA)6.9317.736777.453918.7253



CDS Structure of MLOC_2222






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_2222.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_2222.1NoneAvailableAvailablecontig_11977 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g01710.3 +3 1e-30 111 57/57 (100%) 13105.m00116 protein transcription initiation factor IIA gamma chain, putative, expressed
TAIR PP10 AT4G24440.2 +3 3e-29 106 54/57 (95%) transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) | chr4:12633460-12634553 FORWARD LENGTH=106