MLOC_2222 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_2222_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_2222_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 15.1234 | 9.75357 | 11.6251 | 12.0487 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 15.7862 | 12.9756 | 12.4317 | 12.1795 |
INF1 | Young developing inflorescences (5mm) | 18.9313 | 12.8324 | 16.0091 | 14.2486 |
INF2 | Developing inflorescences (1-1.5 cm) | 22.7076 | 15.64 | 15.3273 | 20.0094 |
ROO | Roots from the seedlings (10 cm shoot stage) | 9.84019 | 8.9968 | 11.6919 | 11.6093 |
NOD | Developing tillers at six leaf stage, 3rd internode | 8.48304 | 9.03607 | 10.774 | 27.5194 |
CAR5 | Developing grain, bracts removed (5 DPA) | 13.21 | 15.063 | 16.5084 | 14.9591 |
CAR15 | Developing grain, bracts removed (15 DPA) | 6.931 | 7.73677 | 7.4539 | 18.7253 |
CDS Structure of MLOC_2222
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_2222.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g01710.3 |
+3 |
1e-30 |
111 |
57/57 (100%) |
13105.m00116 protein transcription initiation factor IIA gamma chain, putative, expressed |
TAIR PP10 |
AT4G24440.2 |
+3 |
3e-29 |
106 |
54/57 (95%) |
transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) | chr4:12633460-12634553 FORWARD LENGTH=106 |