MLOC_22190 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.06926640.12156600.144565
LEAShoots from the seedlings (10 cm shoot stage)0.2239930.11330300.156
INF1Young developing inflorescences (5mm)0.06166820.1233180.07573910.0740542
INF2Developing inflorescences (1-1.5 cm)0.1071620.04898650.07391930.081124
ROORoots from the seedlings (10 cm shoot stage)0.117330.065173700.168987
NODDeveloping tillers at six leaf stage, 3rd internode0.272374000.105869
CAR5Developing grain, bracts removed (5 DPA)96.548198.957393.118889.5927
CAR15Developing grain, bracts removed (15 DPA)553.998454.558482.2121124.46



CDS Structure of MLOC_22190






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22190.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_22190.1CUST_3169_PI427708083AvailableAvailablecontig_160358 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g32660.2 -2 9e-158 459 217/286 (76%) 13102.m03539 protein 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
TAIR PP10 AT5G03650.1 -2 1e-140 419 194/270 (72%) | Symbols: SBE2.2 | starch branching enzyme 2.2 | chr5:931924-937470 FORWARD LENGTH=805