MLOC_22183 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.552641.509961.75271.17961
LEAShoots from the seedlings (10 cm shoot stage)2.13333.448913.602171.96323
INF1Young developing inflorescences (5mm)2.474192.311882.760481.81291
INF2Developing inflorescences (1-1.5 cm)3.189812.899623.079322.87074
ROORoots from the seedlings (10 cm shoot stage)1.443961.167771.581071.18665
NODDeveloping tillers at six leaf stage, 3rd internode0.8826550.9663371.413143.11694
CAR5Developing grain, bracts removed (5 DPA)2.05082.729932.837711.96488
CAR15Developing grain, bracts removed (15 DPA)1.654241.197591.155332.99141



CDS Structure of MLOC_22183






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22183.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361635NoneNoneNoneNone
MLOC_22183.1CUST_1997_PI427708080AvailableAvailablecontig_160351 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g27690.5 +2 6e-46 165 87/129 (67%) 13109.m02707 protein expressed protein
TAIR PP10 AT4G38490.1 +2 5e-24 100 47/78 (60%) unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18006385-18007203 FORWARD LENGTH=153