MLOC_22127 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.744914.509714.243314.3636
LEAShoots from the seedlings (10 cm shoot stage)15.18511.369112.174310.9134
INF1Young developing inflorescences (5mm)11.461811.666613.61129.26278
INF2Developing inflorescences (1-1.5 cm)11.021313.501613.56612.9948
ROORoots from the seedlings (10 cm shoot stage)9.4800112.925711.824314.463
NODDeveloping tillers at six leaf stage, 3rd internode16.960619.257612.335959.0946
CAR5Developing grain, bracts removed (5 DPA)17.599316.265417.239815.4283
CAR15Developing grain, bracts removed (15 DPA)13.179311.193210.596924.9332



CDS Structure of MLOC_22127






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22127.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_22127.1CUST_11730_PI427708083AvailableAvailablecontig_1602770 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g37690.1 +3 5e-50 177 95/130 (73%) 13111.m03690 protein TBC domain containing protein, expressed
TAIR PP10 AT5G54780.1 +3 5e-40 148 76/127 (60%) Ypt/Rab-GAP domain of gyp1p superfamily protein | chr5:22248696-22251692 REVERSE LENGTH=432