- Predicted Gene MLOC_22098
MLOC_22098 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 2.30928 | 2.18006 | 2.22398 | 1.89504 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.76103 | 3.68108 | 3.69763 | 2.45104 |
INF1 | Young developing inflorescences (5mm) | 2.96685 | 3.55422 | 3.26706 | 2.2072 |
INF2 | Developing inflorescences (1-1.5 cm) | 3.60287 | 3.27975 | 3.23177 | 3.10529 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.21463 | 2.07561 | 1.55567 | 1.89112 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.39744 | 2.28554 | 2.85394 | 6.88478 |
CAR5 | Developing grain, bracts removed (5 DPA) | 2.09571 | 2.57757 | 3.13112 | 2.00855 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.02261 | 0.705796 | 1.26462 | 1.76711 |
CDS Structure of MLOC_22098
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_22098.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g29230.1 |
+2 |
6e-20 |
96 |
44/52 (85%) |
13101.m03041 protein expressed protein |
TAIR PP10 |
AT2G48060.1 |
+2 |
3e-15 |
80 |
37/50 (74%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | chr2:19651560-19662386 REVERSE LENGTH=2462 |