MLOC_22098 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.309282.180062.223981.89504
LEAShoots from the seedlings (10 cm shoot stage)2.761033.681083.697632.45104
INF1Young developing inflorescences (5mm)2.966853.554223.267062.2072
INF2Developing inflorescences (1-1.5 cm)3.602873.279753.231773.10529
ROORoots from the seedlings (10 cm shoot stage)1.214632.075611.555671.89112
NODDeveloping tillers at six leaf stage, 3rd internode1.397442.285542.853946.88478
CAR5Developing grain, bracts removed (5 DPA)2.095712.577573.131122.00855
CAR15Developing grain, bracts removed (15 DPA)1.022610.7057961.264621.76711



CDS Structure of MLOC_22098






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22098.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_22098.3CUST_3156_PI427708083AvailableAvailablecontig_160244 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g29230.1 +2 6e-20 96 44/52 (85%) 13101.m03041 protein expressed protein
TAIR PP10 AT2G48060.1 +2 3e-15 80 37/50 (74%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | chr2:19651560-19662386 REVERSE LENGTH=2462