MLOC_22072 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.941787.654427.322115.71039
LEAShoots from the seedlings (10 cm shoot stage)8.896554.409453.073024.69623
INF1Young developing inflorescences (5mm)11.212813.482313.867210.0405
INF2Developing inflorescences (1-1.5 cm)17.607113.870613.329215.6431
ROORoots from the seedlings (10 cm shoot stage)2.314426.178094.372116.28621
NODDeveloping tillers at six leaf stage, 3rd internode5.202828.471825.6265126.3492
CAR5Developing grain, bracts removed (5 DPA)9.223118.266489.300828.08974
CAR15Developing grain, bracts removed (15 DPA)1.078430.9430.9430832.19175



CDS Structure of MLOC_22072






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22072.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_22072.1CUST_10038_PI427708080AvailableAvailablecontig_160213 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g04900.1 -2 0.0 822 499/1076 (46%) 13107.m00435 protein NBS-LRR disease resistance protein, putative
TAIR PP10 AT3G14470.1 -2 5e-61 228 219/800 (27%) NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054