MLOC_22011 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.618716.408545.997256.8804
LEAShoots from the seedlings (10 cm shoot stage)6.343364.912574.295294.80138
INF1Young developing inflorescences (5mm)10.176711.119611.934510.6082
INF2Developing inflorescences (1-1.5 cm)10.357412.033711.647313.9879
ROORoots from the seedlings (10 cm shoot stage)5.917645.861156.371148.23545
NODDeveloping tillers at six leaf stage, 3rd internode3.589243.940036.118316.993
CAR5Developing grain, bracts removed (5 DPA)11.507110.761511.459412.3643
CAR15Developing grain, bracts removed (15 DPA)6.838166.011355.6425216.1719



CDS Structure of MLOC_22011






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22011.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_22011.1CUST_10032_PI427708080AvailableAvailablecontig_160132 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g28720.1 +1 0.0 811 425/497 (86%) 13105.m02957 protein PPR repeat containing protein, expressed
TAIR PP10 AT3G62470.1 +1 5e-167 498 255/473 (54%) Pentatricopeptide repeat (PPR) superfamily protein | chr3:23106600-23108399 REVERSE LENGTH=599