MLOC_21990 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains33.952227.924125.001627.6629
LEAShoots from the seedlings (10 cm shoot stage)19.53317.029367.5899.84574
INF1Young developing inflorescences (5mm)33.973634.847842.197328.9817
INF2Developing inflorescences (1-1.5 cm)25.51527.891229.995528.5992
ROORoots from the seedlings (10 cm shoot stage)25.22331.962527.986733.9407
NODDeveloping tillers at six leaf stage, 3rd internode6.587176.093634.3280517.8198
CAR5Developing grain, bracts removed (5 DPA)17.62621.802117.601817.5997
CAR15Developing grain, bracts removed (15 DPA)3.769542.266743.174746.8934



CDS Structure of MLOC_21990






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21990.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374562NoneNoneNoneNone
MLOC_21990.1CUST_1986_PI427708080AvailableAvailablecontig_1601053 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g10720.2 -2 7e-121 353 172/206 (83%) 13112.m01138 protein glutathione S-transferase, putative, expressed
TAIR PP10 AT2G02380.1 -2 7e-69 219 113/210 (54%) | Symbols: ATGSTZ2, GSTZ2 | glutathione S-transferase (class zeta) 2 | chr2:626878-628569 FORWARD LENGTH=223