MLOC_21960 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.39297.9436711.82879.77876
LEAShoots from the seedlings (10 cm shoot stage)6.89376.670428.957665.83831
INF1Young developing inflorescences (5mm)9.6992114.23114.16869.48561
INF2Developing inflorescences (1-1.5 cm)11.167315.08211.955512.7022
ROORoots from the seedlings (10 cm shoot stage)18.867110.844513.215112.9983
NODDeveloping tillers at six leaf stage, 3rd internode10.581910.412512.158731.0766
CAR5Developing grain, bracts removed (5 DPA)10.096714.112812.383210.6341
CAR15Developing grain, bracts removed (15 DPA)9.76277.625437.0822117.5991



CDS Structure of MLOC_21960






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21960.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21960.1NoneAvailableAvailablecontig_160060 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g29420.4 -3 1e-33 127 61/70 (87%) 13107.m10004 protein DNA-directed RNA polymerase III subunit RPC8, putative, expressed
TAIR PP10None-----