MLOC_21940 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1432190.2245730.2392970.213392
LEAShoots from the seedlings (10 cm shoot stage)0.6259350.2384350.5002080.431189
INF1Young developing inflorescences (5mm)0.4264750.3820750.3093220.329931
INF2Developing inflorescences (1-1.5 cm)0.6539790.7288970.5453350.737078
ROORoots from the seedlings (10 cm shoot stage)000.1055070.0367602
NODDeveloping tillers at six leaf stage, 3rd internode0.05481470.127980.1551050.458076
CAR5Developing grain, bracts removed (5 DPA)0.3222540.2665560.3881020.31581
CAR15Developing grain, bracts removed (15 DPA)0.06576430.1035520.09702740.202257



CDS Structure of MLOC_21940






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21940.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21940.1NoneAvailableAvailablecontig_160040 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g34810.1 +1 4e-114 349 166/321 (52%) 13104.m03382 protein transposon protein, putative, Pong sub-class
TAIR PP10 AT2G13770.1 +1 2e-40 150 75/154 (49%) CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr2:5736603-5737847 FORWARD LENGTH=343