- Predicted Gene MLOC_21940
MLOC_21940 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_21940_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 0.143219 | 0.224573 | 0.239297 | 0.213392 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.625935 | 0.238435 | 0.500208 | 0.431189 |
INF1 | Young developing inflorescences (5mm) | 0.426475 | 0.382075 | 0.309322 | 0.329931 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.653979 | 0.728897 | 0.545335 | 0.737078 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0 | 0.105507 | 0.0367602 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.0548147 | 0.12798 | 0.155105 | 0.458076 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.322254 | 0.266556 | 0.388102 | 0.31581 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.0657643 | 0.103552 | 0.0970274 | 0.202257 |
CDS Structure of MLOC_21940
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_21940.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g34810.1 |
+1 |
4e-114 |
349 |
166/321 (52%) |
13104.m03382 protein transposon protein, putative, Pong sub-class |
TAIR PP10 |
AT2G13770.1 |
+1 |
2e-40 |
150 |
75/154 (49%) |
CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr2:5736603-5737847 FORWARD LENGTH=343 |