MLOC_21933 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains215.857182.676194.189194.49
LEAShoots from the seedlings (10 cm shoot stage)32.195233.708512.267620.5183
INF1Young developing inflorescences (5mm)115.293126.665207.77134.013
INF2Developing inflorescences (1-1.5 cm)13.823813.922821.037617.9739
ROORoots from the seedlings (10 cm shoot stage)82.91184.599563.934489.3691
NODDeveloping tillers at six leaf stage, 3rd internode118.85183.448252.0379192.64
CAR5Developing grain, bracts removed (5 DPA)268.973239.4304.14276.955
CAR15Developing grain, bracts removed (15 DPA)36.264727.757133.194480.7881



CDS Structure of MLOC_21933






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21933.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356126NoneNoneNoneNone
MLOC_21933.2CUST_1982_PI427708080AvailableAvailablecontig_160028 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g12500.1 +2 0.0 685 367/471 (78%) 13103.m01431 protein cytochrome P450, putative, expressed
TAIR PP10 AT5G42650.1 +2 4e-168 499 257/473 (54%) | Symbols: AOS, CYP74A, DDE2 | allene oxide synthase | chr5:17097803-17099359 REVERSE LENGTH=518