MLOC_21885 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.852273.148821.687232.71232
LEAShoots from the seedlings (10 cm shoot stage)12.47785.65926.773296.89154
INF1Young developing inflorescences (5mm)2.422872.794713.772672.52249
INF2Developing inflorescences (1-1.5 cm)6.403295.645246.285496.66113
ROORoots from the seedlings (10 cm shoot stage)2.638024.036673.698674.41872
NODDeveloping tillers at six leaf stage, 3rd internode9.3718212.59168.941133.4494
CAR5Developing grain, bracts removed (5 DPA)0.3315621.183190.8782010.822658
CAR15Developing grain, bracts removed (15 DPA)1.462871.407481.780323.68338



CDS Structure of MLOC_21885






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21885.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371838NoneNoneNoneNone
MLOC_21885.3CUST_17974_PI427708080AvailableAvailablecontig_159655 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g37970.1 +1 2e-30 115 74/132 (56%) 13102.m04166 protein DUF581 domain containing protein, expressed
TAIR PP10 AT5G49120.1 +1 1e-11 63 31/80 (39%) Protein of unknown function (DUF581) | chr5:19908800-19909332 REVERSE LENGTH=150