MLOC_21828 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.492120.053218.067418.0949
LEAShoots from the seedlings (10 cm shoot stage)22.3524.223288.8658710.7109
INF1Young developing inflorescences (5mm)34.140841.554640.480528.6149
INF2Developing inflorescences (1-1.5 cm)18.40122.363720.16821.0712
ROORoots from the seedlings (10 cm shoot stage)3.635937.890049.538658.36225
NODDeveloping tillers at six leaf stage, 3rd internode45.537639.581131.6774132.964
CAR5Developing grain, bracts removed (5 DPA)7.224657.345668.580316.78712
CAR15Developing grain, bracts removed (15 DPA)0.8123081.299560.963732.01959



CDS Structure of MLOC_21828






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21828.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21828.1CUST_3122_PI427708083AvailableAvailablecontig_159920 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g33080.1 +1 8e-87 277 135/146 (92%) 13101.m03340 protein fimbrin-like protein 2, putative, expressed
TAIR PP10 AT5G48460.1 +1 3e-65 218 104/137 (76%) Actin binding Calponin homology (CH) domain-containing protein | chr5:19636225-19639365 REVERSE LENGTH=654