MLOC_21799 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.319868.915348.510589.80674
LEAShoots from the seedlings (10 cm shoot stage)7.506714.603495.248774.92251
INF1Young developing inflorescences (5mm)9.7625512.879814.65111.2879
INF2Developing inflorescences (1-1.5 cm)16.457118.096618.822120.9136
ROORoots from the seedlings (10 cm shoot stage)6.754067.953657.501099.97985
NODDeveloping tillers at six leaf stage, 3rd internode7.131510.94569.7663632.7585
CAR5Developing grain, bracts removed (5 DPA)6.185145.734476.023156.48998
CAR15Developing grain, bracts removed (15 DPA)4.729394.652795.2723612.0423



CDS Structure of MLOC_21799






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21799.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21799.2NoneAvailableAvailablecontig_159896 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g44900.2 -1 3e-23 104 59/105 (56%) 13103.m04842 protein CCR4-NOT transcription factor, putative, expressed
TAIR PP10 AT5G18230.1 -1 2e-23 104 59/105 (56%) transcription regulator NOT2/NOT3/NOT5 family protein | chr5:6021610-6027031 REVERSE LENGTH=843