MLOC_2174 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.6565626.67421.448118.8993
LEAShoots from the seedlings (10 cm shoot stage)25.054112.359712.598814.4944
INF1Young developing inflorescences (5mm)36.03937.425733.039228.033
INF2Developing inflorescences (1-1.5 cm)38.863940.02835.527739.6815
ROORoots from the seedlings (10 cm shoot stage)8.4770618.269412.69618.8818
NODDeveloping tillers at six leaf stage, 3rd internode20.890326.551512.574979.7646
CAR5Developing grain, bracts removed (5 DPA)32.459428.044231.974227.5133
CAR15Developing grain, bracts removed (15 DPA)21.17117.040720.381740.886



CDS Structure of MLOC_2174






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_2174.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_2174.1CUST_10010_PI427708080AvailableAvailablecontig_119289 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g46894.1 +1 0.0 1977 1128/1310 (86%) 13104.m04738 protein beige/BEACH domain containing protein, expressed
TAIR PP10 AT2G45540.2 +1 0.0 1492 862/1307 (66%) WD-40 repeat family protein / beige-related | chr2:18757881-18772229 REVERSE LENGTH=3001