MLOC_2171 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 4.39646 | 4.86273 | 4.17004 | 4.77595 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 1.8131 | 0.530261 | 0.975971 | 0.967919 |
| INF1 | Young developing inflorescences (5mm) | 10.3416 | 11.9841 | 12.8266 | 9.88413 |
| INF2 | Developing inflorescences (1-1.5 cm) | 16.7755 | 14.4144 | 12.6286 | 16.5585 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 2.22754 | 3.25597 | 1.90514 | 3.5995 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0.282479 | 0.607461 | 0.947962 | 2.00685 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 6.25045 | 6.37858 | 6.36433 | 6.39037 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.482482 | 0.509587 | 0.508809 | 1.18881 |
CDS Structure of MLOC_2171
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_2171.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os02g07180.1 |
-1 |
8e-80 |
265 |
183/436 (42%) |
13102.m00809 protein expressed protein |
| TAIR PP10 |
AT2G30820.2 |
-1 |
7e-20 |
93 |
78/238 (33%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:13129800-13132391 FORWARD LENGTH=421 |
