MLOC_21670 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains03.44992.106383.76853
LEAShoots from the seedlings (10 cm shoot stage)145.365207.387131.233138.867
INF1Young developing inflorescences (5mm)00.639540.7927741.15656
INF2Developing inflorescences (1-1.5 cm)0.504109000.609221
ROORoots from the seedlings (10 cm shoot stage)1.405880.7282294.538571.91337
NODDeveloping tillers at six leaf stage, 3rd internode0.5906721.445770.8394664.51971
CAR5Developing grain, bracts removed (5 DPA)00.5925245.522863.074
CAR15Developing grain, bracts removed (15 DPA)1.891492.036472.946714.97381



CDS Structure of MLOC_21670






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21670.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21670.1NoneAvailableAvailablecontig_159745 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g38229.1 +2 5e-17 76 46/54 (85%) 13110.m07791 protein photosystem I P700 chlorophyll a apoprotein A1, putative
TAIR PP10 ATCG00350.1 +2 1e-16 74 44/54 (81%) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750