MLOC_21667 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1852850.1633750.1778010.175934
LEAShoots from the seedlings (10 cm shoot stage)0.2817470.1775910.1533780.168854
INF1Young developing inflorescences (5mm)0.2524420.2072040.1419570.17707
INF2Developing inflorescences (1-1.5 cm)0.4765970.3691240.2831290.428841
ROORoots from the seedlings (10 cm shoot stage)0.03644440.1626300.148477
NODDeveloping tillers at six leaf stage, 3rd internode0.02971620.09122140.08757640.278093
CAR5Developing grain, bracts removed (5 DPA)0.2609470.2279720.2362280.237893
CAR15Developing grain, bracts removed (15 DPA)0.1310140.1576160.1401810.335687



CDS Structure of MLOC_21667






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21667.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21667.1CUST_9999_PI427708080AvailableAvailablecontig_159737 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g58830.1 -2 2e-93 211 105/162 (65%) 13101.m06250 protein transposon protein, putative, unclassified
TAIR PP10 AT3G42170.1 -2 2e-21 77 50/164 (30%) BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696