MLOC_21653 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.688853.081732.221243.27363
LEAShoots from the seedlings (10 cm shoot stage)13.096313.412911.282211.6002
INF1Young developing inflorescences (5mm)2.210562.096123.466162.27511
INF2Developing inflorescences (1-1.5 cm)1.148612.065311.685491.96475
ROORoots from the seedlings (10 cm shoot stage)8.121513.524719.052917.7426
NODDeveloping tillers at six leaf stage, 3rd internode12.820913.142219.538553.5137
CAR5Developing grain, bracts removed (5 DPA)5.034083.888192.921884.05971
CAR15Developing grain, bracts removed (15 DPA)4.699815.725863.7350411.8643



CDS Structure of MLOC_21653






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21653.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21653.2CUST_3099_PI427708083AvailableAvailablecontig_159719 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g47870.2 +2 4e-64 213 99/119 (83%) 13104.m04863 protein PINHEAD, putative, expressed
TAIR PP10 AT1G48410.1 +2 6e-47 164 77/119 (65%) | Symbols: AGO1 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr1:17886285-17891892 REVERSE LENGTH=1048