MLOC_21596 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains44.813132.223539.849738.7264
LEAShoots from the seedlings (10 cm shoot stage)33.579630.134424.378225.1657
INF1Young developing inflorescences (5mm)14.281715.405214.747412.9563
INF2Developing inflorescences (1-1.5 cm)9.372628.5868110.826110.3141
ROORoots from the seedlings (10 cm shoot stage)39.514639.468141.731246.8407
NODDeveloping tillers at six leaf stage, 3rd internode86.940481.643638.3803230.1
CAR5Developing grain, bracts removed (5 DPA)14.473715.725617.676815.8246
CAR15Developing grain, bracts removed (15 DPA)3.186283.803332.983497.82103



CDS Structure of MLOC_21596






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21596.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249393.1NoneNoneNoneNone
MLOC_21596.1CUST_1962_PI427708080AvailableAvailablecontig_159655 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g37730.1 -1 3e-121 367 177/243 (73%) 13111.m03694 protein glutathione S-transferase, N-terminal domain containing protein, expressed
TAIR PP10 AT5G41210.1 -1 5e-99 309 149/224 (67%) | Symbols: ATGSTT1, GST10, GSTT1 | glutathione S-transferase THETA 1 | chr5:16492550-16493884 REVERSE LENGTH=245