MLOC_21595 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.760223.291921.65321.2114
LEAShoots from the seedlings (10 cm shoot stage)25.106823.863817.992520.4663
INF1Young developing inflorescences (5mm)23.278624.848925.619421.6847
INF2Developing inflorescences (1-1.5 cm)23.259920.75521.37225.3756
ROORoots from the seedlings (10 cm shoot stage)13.303619.521515.481724.5649
NODDeveloping tillers at six leaf stage, 3rd internode23.103623.882119.247889.3096
CAR5Developing grain, bracts removed (5 DPA)28.204323.609128.005227.5131
CAR15Developing grain, bracts removed (15 DPA)30.069926.554628.171368.6956



CDS Structure of MLOC_21595






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21595.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365942NoneNoneNoneNone
MLOC_21595.1CUST_17973_PI427708080AvailableAvailablecontig_159655 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g64400.1 +2 0.0 847 541/844 (64%) 13103.m07157 protein oxidoreductase/ transition metal ion binding protein, putative, expressed
TAIR PP10 AT5G23890.1 +2 2e-169 526 357/760 (47%) LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8058789-8063005 FORWARD LENGTH=946