MLOC_2158 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.869613.229814.074615.5514
LEAShoots from the seedlings (10 cm shoot stage)12.229116.198613.46112.0571
INF1Young developing inflorescences (5mm)11.102910.49499.838838.85707
INF2Developing inflorescences (1-1.5 cm)8.8592411.34216.6975410.4752
ROORoots from the seedlings (10 cm shoot stage)16.424317.144910.1919.9832
NODDeveloping tillers at six leaf stage, 3rd internode10.5596.906766.0614924.5927
CAR5Developing grain, bracts removed (5 DPA)12.97916.640218.253813.9284
CAR15Developing grain, bracts removed (15 DPA)1.8063.07622.912715.61134



CDS Structure of MLOC_2158






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_2158.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_2158.1CUST_3089_PI427708083AvailableAvailablecontig_119189 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g29620.1 +2 4e-95 290 134/169 (79%) 13107.m02977 protein OsSCP39 - Putative Serine Carboxypeptidase homologue, expressed
TAIR PP10 AT3G10410.1 +2 9e-84 259 120/169 (71%) | Symbols: SCPL49, CPY | SERINE CARBOXYPEPTIDASE-LIKE 49 | chr3:3235518-3238063 REVERSE LENGTH=516