MLOC_21559 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.610512.019213.626214.584
LEAShoots from the seedlings (10 cm shoot stage)10.094910.729713.52819.76428
INF1Young developing inflorescences (5mm)34.361440.49839.035333.7553
INF2Developing inflorescences (1-1.5 cm)5.251565.886986.573236.64243
ROORoots from the seedlings (10 cm shoot stage)17.693811.79266.4249514.8619
NODDeveloping tillers at six leaf stage, 3rd internode27.562313.62349.3918439.6415
CAR5Developing grain, bracts removed (5 DPA)14.91459.713959.9759311.588
CAR15Developing grain, bracts removed (15 DPA)2.383932.593092.67766.31154



CDS Structure of MLOC_21559






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21559.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371122NoneNoneNoneNone
MLOC_21559.2CUST_1959_PI427708080AvailableAvailablecontig_159615 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g18070.1 +1 0.0 652 339/411 (82%) 13103.m02163 protein omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
TAIR PP10 AT5G05580.1 +1 0.0 554 276/394 (70%) | Symbols: FAD8 | fatty acid desaturase 8 | chr5:1664331-1666345 FORWARD LENGTH=435