MLOC_21522 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains508.327415.456416.036619.764
LEAShoots from the seedlings (10 cm shoot stage)221.164126.374101.253156.24
INF1Young developing inflorescences (5mm)230.583193.789220.382251.867
INF2Developing inflorescences (1-1.5 cm)227.706131.037115.968226.298
ROORoots from the seedlings (10 cm shoot stage)301.339207.148235.78387.487
NODDeveloping tillers at six leaf stage, 3rd internode208.49668.917476.8663287.503
CAR5Developing grain, bracts removed (5 DPA)176.305191.122165.117250.449
CAR15Developing grain, bracts removed (15 DPA)31.907735.839629.6687105.469



CDS Structure of MLOC_21522






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21522.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21522.1CUST_3075_PI427708083AvailableAvailablecontig_159588 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6None-----
TAIR PP10 AT2G41110.2 +1 4e-11 57 26/31 (84%) | Symbols: CAM2 | calmodulin 2 | chr2:17140379-17141192 FORWARD LENGTH=161