MLOC_21502 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.7043480.7810330.6955270.417389
LEAShoots from the seedlings (10 cm shoot stage)0.1501740.07584290.4382830.139573
INF1Young developing inflorescences (5mm)6.001686.256616.61432.84688
INF2Developing inflorescences (1-1.5 cm)6.288346.959236.196994.27287
ROORoots from the seedlings (10 cm shoot stage)1.289030.7142461.362010.569375
NODDeveloping tillers at six leaf stage, 3rd internode0.06318970.1677580.5329420.589368
CAR5Developing grain, bracts removed (5 DPA)1.773512.502451.720451.13662
CAR15Developing grain, bracts removed (15 DPA)0.506650.4418340.2013220.623312



CDS Structure of MLOC_21502






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21502.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21502.1CUST_3073_PI427708083AvailableAvailablecontig_159565 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g01240.1 +2 1e-99 324 163/292 (56%) 13111.m00032 protein IBR domain containing protein
TAIR PP10 AT5G60250.1 +2 5e-83 281 127/296 (43%) zinc finger (C3HC4-type RING finger) family protein | chr5:24252226-24254710 FORWARD LENGTH=655