MLOC_21381 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.112351.066781.168661.08334
LEAShoots from the seedlings (10 cm shoot stage)1.008620.3546010.158620.430975
INF1Young developing inflorescences (5mm)0.05601470.09157950.1415780.0862538
INF2Developing inflorescences (1-1.5 cm)0.05081640.02404860.03243070.0393786
ROORoots from the seedlings (10 cm shoot stage)2.480031.733391.750892.09913
NODDeveloping tillers at six leaf stage, 3rd internode2.277420.7465010.8835552.39961
CAR5Developing grain, bracts removed (5 DPA)0.8511550.6493740.5434220.658196
CAR15Developing grain, bracts removed (15 DPA)6.185426.463057.1712315.271



CDS Structure of MLOC_21381






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21381.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21381.1CUST_11698_PI427708083AvailableAvailablecontig_159469 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g45020.1 -2 4e-50 177 78/89 (88%) 13104.m04507 protein MYB family transcription factor, putative, expressed
TAIR PP10 AT5G52260.1 -2 7e-39 144 63/86 (73%) | Symbols: AtMYB19, MYB19 | myb domain protein 19 | chr5:21220165-21221223 FORWARD LENGTH=268