MLOC_21341 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.297682.109793.43191.42811
LEAShoots from the seedlings (10 cm shoot stage)14.797619.844513.0779.34907
INF1Young developing inflorescences (5mm)5.54633.230754.592532.63627
INF2Developing inflorescences (1-1.5 cm)3.398343.057843.98082.85413
ROORoots from the seedlings (10 cm shoot stage)2.024932.203991.964331.76802
NODDeveloping tillers at six leaf stage, 3rd internode9.993177.5187610.850419.902
CAR5Developing grain, bracts removed (5 DPA)3.296662.34243.154272.07678
CAR15Developing grain, bracts removed (15 DPA)0.6723780.70310.522551.029



CDS Structure of MLOC_21341






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21341.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21341.1CUST_11694_PI427708083AvailableAvailablecontig_159439 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g28540.2 -3 7e-69 232 115/142 (81%) 13101.m02960 protein stress regulated protein, putative, expressed
TAIR PP10 AT5G27290.2 -3 3e-53 186 85/142 (60%) unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 199 Blast hits to 194 proteins in 57 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr5:9618787-9620473 REVERSE LENGTH=262