MLOC_21290 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)00.083193700.133134
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.1051410.4837010.1128840.263805
CAR15Developing grain, bracts removed (15 DPA)0.5148770.4348630.1533310.963398



CDS Structure of MLOC_21290






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21290.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21290.1CUST_3045_PI427708083AvailableAvailablecontig_159403 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g12080.1 -1 6e-56 184 95/165 (58%) 13106.m01312 protein mTERF family protein, expressed
TAIR PP10 AT1G21150.1 -1 4e-24 98 43/139 (31%) Mitochondrial transcription termination factor family protein | chr1:7406406-7407578 REVERSE LENGTH=390