MLOC_21289 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.928295.256.159625.1625
LEAShoots from the seedlings (10 cm shoot stage)31.067246.263441.720229.3716
INF1Young developing inflorescences (5mm)0.9400721.352131.290080.821286
INF2Developing inflorescences (1-1.5 cm)2.006222.181112.143571.96175
ROORoots from the seedlings (10 cm shoot stage)7.2279810.79364.497359.71155
NODDeveloping tillers at six leaf stage, 3rd internode1.464832.854774.506649.11703
CAR5Developing grain, bracts removed (5 DPA)3.933654.353094.473453.40529
CAR15Developing grain, bracts removed (15 DPA)2.296392.332242.344824.29982



CDS Structure of MLOC_21289






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21289.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21289.1CUST_9968_PI427708080AvailableAvailablecontig_159403 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g14980.1 +1 0.0 702 367/443 (83%) 13102.m01669 protein calcium-binding EF hand family protein, putative, expressed
TAIR PP10 AT1G53210.1 +1 2e-176 513 268/450 (60%) sodium/calcium exchanger family protein / calcium-binding EF hand family protein | chr1:19844790-19847533 FORWARD LENGTH=585