MLOC_21288 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.891122.182672.153942.54061
LEAShoots from the seedlings (10 cm shoot stage)10.837916.26858.2207911.4681
INF1Young developing inflorescences (5mm)0.908030.5248040.565290.700843
INF2Developing inflorescences (1-1.5 cm)1.227560.7181731.347231.48753
ROORoots from the seedlings (10 cm shoot stage)1.402113.03961.536964.15101
NODDeveloping tillers at six leaf stage, 3rd internode0.3044510.4722260.8897581.75831
CAR5Developing grain, bracts removed (5 DPA)2.968563.180822.753253.93441
CAR15Developing grain, bracts removed (15 DPA)1.390530.9917591.709614.06712



CDS Structure of MLOC_21288






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21288.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21288.1CUST_3044_PI427708083AvailableAvailablecontig_159403 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g14980.1 +3 3e-30 115 62/83 (75%) 13102.m01669 protein calcium-binding EF hand family protein, putative, expressed
TAIR PP10 AT1G53210.1 +3 3e-26 103 49/58 (84%) sodium/calcium exchanger family protein / calcium-binding EF hand family protein | chr1:19844790-19847533 FORWARD LENGTH=585