MLOC_21279 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains37.583732.742333.757235.882
LEAShoots from the seedlings (10 cm shoot stage)26.78821.965821.598520.8878
INF1Young developing inflorescences (5mm)27.690133.383336.08828.8092
INF2Developing inflorescences (1-1.5 cm)26.636328.119926.029130.9099
ROORoots from the seedlings (10 cm shoot stage)32.8627.822729.301837.3685
NODDeveloping tillers at six leaf stage, 3rd internode33.193243.766157.1114158.445
CAR5Developing grain, bracts removed (5 DPA)27.664229.582330.530230.3653
CAR15Developing grain, bracts removed (15 DPA)6.937416.077276.7938915.9401



CDS Structure of MLOC_21279






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21279.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369101NoneNoneNoneNone
MLOC_21279.1CUST_1945_PI427708080AvailableAvailablecontig_159398 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g16940.1 +3 2e-155 447 235/307 (77%) 13101.m01898 protein MazG nucleotide pyrophosphohydrolase domain containing protein, expressed
TAIR PP10 AT1G31860.1 +3 3e-114 340 165/236 (70%) | Symbols: AT-IE, HISN2 | histidine biosynthesis bifunctional protein (HISIE) | chr1:11434250-11436530 REVERSE LENGTH=281