- Predicted Gene MLOC_21226
MLOC_21226 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 18.2519 | 26.1808 | 27.4474 | 18.2616 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 27.9846 | 24.4775 | 20.6205 | 16.5298 |
INF1 | Young developing inflorescences (5mm) | 4.89545 | 4.42773 | 3.18986 | 2.81617 |
INF2 | Developing inflorescences (1-1.5 cm) | 2.81743 | 3.12671 | 3.20148 | 2.58886 |
ROO | Roots from the seedlings (10 cm shoot stage) | 14.2192 | 19.2305 | 19.5269 | 15.8616 |
NOD | Developing tillers at six leaf stage, 3rd internode | 39.1019 | 9.72346 | 12.6704 | 26.746 |
CAR5 | Developing grain, bracts removed (5 DPA) | 9.54853 | 7.25389 | 8.8233 | 6.21152 |
CAR15 | Developing grain, bracts removed (15 DPA) | 2.29801 | 2.70171 | 3.70376 | 4.53161 |
CDS Structure of MLOC_21226
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_21226.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g12730.1 |
-2 |
3e-24 |
103 |
51/54 (94%) |
13101.m01386 protein ras-related protein, putative, expressed |
TAIR PP10 |
AT3G16100.1 |
-2 |
1e-23 |
101 |
49/54 (91%) |
| Symbols: ATRABG3C, ATRAB7D, RABG3c | RAB GTPase homolog G3C | chr3:5459270-5460556 FORWARD LENGTH=206 |