MLOC_21226 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.251926.180827.447418.2616
LEAShoots from the seedlings (10 cm shoot stage)27.984624.477520.620516.5298
INF1Young developing inflorescences (5mm)4.895454.427733.189862.81617
INF2Developing inflorescences (1-1.5 cm)2.817433.126713.201482.58886
ROORoots from the seedlings (10 cm shoot stage)14.219219.230519.526915.8616
NODDeveloping tillers at six leaf stage, 3rd internode39.10199.7234612.670426.746
CAR5Developing grain, bracts removed (5 DPA)9.548537.253898.82336.21152
CAR15Developing grain, bracts removed (15 DPA)2.298012.701713.703764.53161



CDS Structure of MLOC_21226






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21226.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21226.1CUST_11688_PI427708083AvailableAvailablecontig_1593715 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g12730.1 -2 3e-24 103 51/54 (94%) 13101.m01386 protein ras-related protein, putative, expressed
TAIR PP10 AT3G16100.1 -2 1e-23 101 49/54 (91%) | Symbols: ATRABG3C, ATRAB7D, RABG3c | RAB GTPase homolog G3C | chr3:5459270-5460556 FORWARD LENGTH=206