MLOC_21100 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains31.724817.320419.491619.924
LEAShoots from the seedlings (10 cm shoot stage)15.29156.3830612.59359.29922
INF1Young developing inflorescences (5mm)1.896331.016310.3243140.931354
INF2Developing inflorescences (1-1.5 cm)1.11883.636633.570572.86333
ROORoots from the seedlings (10 cm shoot stage)3.851356.059962.630935.90282
NODDeveloping tillers at six leaf stage, 3rd internode1.261632.637591.045186.34211
CAR5Developing grain, bracts removed (5 DPA)30.320728.996328.517827.02
CAR15Developing grain, bracts removed (15 DPA)0.4160240.2742140.3692850.832014



CDS Structure of MLOC_21100






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21100.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21100.1NoneAvailableAvailablecontig_1593147 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g44360.1 +2 8e-47 164 78/119 (66%) 13108.m04811 protein male sterility protein 2, putative, expressed
TAIR PP10 AT4G33790.1 +2 4e-24 100 44/90 (49%) | Symbols: CER4, G7, FAR3 | Jojoba acyl CoA reductase-related male sterility protein | chr4:16204325-16207891 REVERSE LENGTH=493