MLOC_211 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4551430.4686220.2243280.443971
LEAShoots from the seedlings (10 cm shoot stage)0.1971800.1574590.156041
INF1Young developing inflorescences (5mm)0.1297680.3805920.04058290.197183
INF2Developing inflorescences (1-1.5 cm)0.1013750.0647040.2788710.167245
ROORoots from the seedlings (10 cm shoot stage)0.7613580.7149010.8940850.904408
NODDeveloping tillers at six leaf stage, 3rd internode0.4946940.3645260.4604241.07107
CAR5Developing grain, bracts removed (5 DPA)0.282790.1148310.1550660.196216
CAR15Developing grain, bracts removed (15 DPA)0.05721790.1661030.04138410.296034



CDS Structure of MLOC_211






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_211.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374400NoneNoneNoneNone
MLOC_211.2CUST_18_PI427708080AvailableAvailablecontig_101356 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g43080.1 +3 4e-88 272 139/201 (69%) 13101.m04442 protein exonuclease, putative, expressed
TAIR PP10 AT3G15140.1 +3 4e-14 73 49/180 (27%) Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:5099712-5101717 REVERSE LENGTH=337