MLOC_21047 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.8246314.696714.29911.3689
LEAShoots from the seedlings (10 cm shoot stage)15.84915.860412.108511.8488
INF1Young developing inflorescences (5mm)19.36519.717823.27315.1595
INF2Developing inflorescences (1-1.5 cm)28.929927.249628.560427.2985
ROORoots from the seedlings (10 cm shoot stage)2.9155311.779310.237911.0105
NODDeveloping tillers at six leaf stage, 3rd internode7.019626.881598.1547324.567
CAR5Developing grain, bracts removed (5 DPA)21.66423.355522.812918.9869
CAR15Developing grain, bracts removed (15 DPA)8.0568.719169.1347216.7467



CDS Structure of MLOC_21047






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21047.6
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21047.6CUST_9944_PI427708080AvailableAvailablecontig_1592918 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g13400.2 +2 0.0 647 322/454 (71%) 13102.m01487 protein expressed protein
TAIR PP10 AT4G32850.7 +2 5e-165 489 231/327 (71%) | Symbols: nPAP | nuclear poly(a) polymerase | chr4:15850134-15853906 FORWARD LENGTH=716