MLOC_21006 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.709716.153115.095716.3167
LEAShoots from the seedlings (10 cm shoot stage)12.237714.020221.369813.3818
INF1Young developing inflorescences (5mm)25.715430.348331.987722.8641
INF2Developing inflorescences (1-1.5 cm)30.550728.387131.362830.7913
ROORoots from the seedlings (10 cm shoot stage)16.133117.338914.884819.7792
NODDeveloping tillers at six leaf stage, 3rd internode23.673833.696736.5997111.342
CAR5Developing grain, bracts removed (5 DPA)16.510418.470317.509315.8377
CAR15Developing grain, bracts removed (15 DPA)11.18349.997598.3156921.7883



CDS Structure of MLOC_21006






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_21006.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_21006.1CUST_3012_PI427708083AvailableAvailablecontig_1592786 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g09120.1 -3 1e-57 196 93/124 (75%) 13112.m00966 protein mRNA-capping enzyme, putative, expressed
TAIR PP10 AT5G01290.1 -3 5e-35 132 64/108 (59%) mRNA capping enzyme family protein | chr5:117520-121392 FORWARD LENGTH=657