MLOC_20975 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.459316.424656.414575.04349
LEAShoots from the seedlings (10 cm shoot stage)3.412681.450682.547421.74372
INF1Young developing inflorescences (5mm)6.259297.901437.896664.19751
INF2Developing inflorescences (1-1.5 cm)4.896895.820295.243044.24796
ROORoots from the seedlings (10 cm shoot stage)4.693353.938823.998413.69222
NODDeveloping tillers at six leaf stage, 3rd internode2.430981.790121.839014.88439
CAR5Developing grain, bracts removed (5 DPA)4.248584.980796.097813.36417
CAR15Developing grain, bracts removed (15 DPA)5.534494.049454.472017.74463



CDS Structure of MLOC_20975






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20975.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20975.1NoneAvailableAvailablecontig_1592589 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g25640.2 -2 3e-67 233 113/121 (93%) 13109.m02457 protein 5-nucleotidase domain-containing protein, putative, expressed
TAIR PP10 AT2G23890.1 -2 6e-40 154 70/114 (61%) HAD-superfamily hydrolase, subfamily IG, 5-nucleotidase | chr2:10170680-10173622 FORWARD LENGTH=553