MLOC_20963 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains152.791114.746105.07115.091
LEAShoots from the seedlings (10 cm shoot stage)74.004981.7371100.43866.05
INF1Young developing inflorescences (5mm)129.382136.882144.419114.053
INF2Developing inflorescences (1-1.5 cm)94.8513123.386118.391121.081
ROORoots from the seedlings (10 cm shoot stage)138.581138.763159.034151.794
NODDeveloping tillers at six leaf stage, 3rd internode83.491475.1794105.441229.312
CAR5Developing grain, bracts removed (5 DPA)56.965965.33956.828658.4183
CAR15Developing grain, bracts removed (15 DPA)10.157810.057911.370824.4179



CDS Structure of MLOC_20963






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20963.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370529NoneNoneNoneNone
MLOC_20963.2CUST_1930_PI427708080AvailableAvailablecontig_1592559 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g55030.1 -3 8e-65 204 100/117 (85%) 13101.m05788 protein DNA-binding protein-related, putative, expressed
TAIR PP10 AT1G23750.1 -3 6e-50 165 80/116 (69%) Nucleic acid-binding, OB-fold-like protein | chr1:8400638-8401171 FORWARD LENGTH=137