MLOC_20953 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains29.431928.568134.561122.2152
LEAShoots from the seedlings (10 cm shoot stage)31.340228.726735.030520.194
INF1Young developing inflorescences (5mm)25.093329.747432.135616.9352
INF2Developing inflorescences (1-1.5 cm)26.076828.160323.488822.0558
ROORoots from the seedlings (10 cm shoot stage)44.161831.089925.818129.4303
NODDeveloping tillers at six leaf stage, 3rd internode33.439127.436626.354263.7167
CAR5Developing grain, bracts removed (5 DPA)26.249526.583227.335419.141
CAR15Developing grain, bracts removed (15 DPA)16.771814.660617.51927.2195



CDS Structure of MLOC_20953






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20953.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20953.1NoneAvailableAvailablecontig_159249 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g46160.1 -3 2e-64 213 105/123 (85%) 13107.m04859 protein MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed
TAIR PP10 AT5G19000.1 -3 9e-49 171 80/123 (65%) | Symbols: ATBPM1, BPM1 | BTB-POZ and MATH domain 1 | chr5:6342563-6344641 FORWARD LENGTH=407