MLOC_209 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.560524.602723.324321.2414
LEAShoots from the seedlings (10 cm shoot stage)24.549521.096222.183418.6924
INF1Young developing inflorescences (5mm)20.971820.72223.843217.1921
INF2Developing inflorescences (1-1.5 cm)25.072423.875624.075125.2099
ROORoots from the seedlings (10 cm shoot stage)22.61725.374921.02828.0112
NODDeveloping tillers at six leaf stage, 3rd internode14.538815.765515.821649.8837
CAR5Developing grain, bracts removed (5 DPA)21.23220.97822.504119.5571
CAR15Developing grain, bracts removed (15 DPA)13.711312.764711.109527.5828



CDS Structure of MLOC_209






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_209.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_209.1CUST_9923_PI427708080AvailableAvailablecontig_101311 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g19330.2 -2 0.0 864 557/817 (68%) 13102.m02163 protein expressed protein
TAIR PP10 AT1G79090.2 -2 1e-133 426 332/776 (43%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). | chr1:29749551-29752945 REVERSE LENGTH=793