MLOC_209 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 16.5605 | 24.6027 | 23.3243 | 21.2414 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 24.5495 | 21.0962 | 22.1834 | 18.6924 |
| INF1 | Young developing inflorescences (5mm) | 20.9718 | 20.722 | 23.8432 | 17.1921 |
| INF2 | Developing inflorescences (1-1.5 cm) | 25.0724 | 23.8756 | 24.0751 | 25.2099 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 22.617 | 25.3749 | 21.028 | 28.0112 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 14.5388 | 15.7655 | 15.8216 | 49.8837 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 21.232 | 20.978 | 22.5041 | 19.5571 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 13.7113 | 12.7647 | 11.1095 | 27.5828 |
CDS Structure of MLOC_209
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_209.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os02g19330.2 |
-2 |
0.0 |
864 |
557/817 (68%) |
13102.m02163 protein expressed protein |
| TAIR PP10 |
AT1G79090.2 |
-2 |
1e-133 |
426 |
332/776 (43%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). | chr1:29749551-29752945 REVERSE LENGTH=793 |