MLOC_20847 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.93969.6394510.894910.587
LEAShoots from the seedlings (10 cm shoot stage)10.663510.134912.72048.59603
INF1Young developing inflorescences (5mm)6.031987.122128.472445.28937
INF2Developing inflorescences (1-1.5 cm)5.448235.825476.004885.46362
ROORoots from the seedlings (10 cm shoot stage)20.430317.021617.298219.1183
NODDeveloping tillers at six leaf stage, 3rd internode26.975637.801138.1255108.285
CAR5Developing grain, bracts removed (5 DPA)24.285124.278524.429221.2132
CAR15Developing grain, bracts removed (15 DPA)4.199894.152495.043388.58346



CDS Structure of MLOC_20847






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20847.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20847.1CUST_11672_PI427708083AvailableAvailablecontig_1592014 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g10190.1 +2 4e-104 352 176/211 (83%) 13102.m01128 protein DUF1680 domain containing protein, putative, expressed
TAIR PP10 AT1G51200.4 -3 3e-52 183 96/178 (54%) A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173