- Predicted Gene MLOC_20816
MLOC_20816 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_20816_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_20816_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 4.45949 | 5.32921 | 5.20058 | 5.81394 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 15.4904 | 25.0596 | 21.6472 | 20.3388 |
INF1 | Young developing inflorescences (5mm) | 7.04677 | 6.3167 | 7.48683 | 6.32787 |
INF2 | Developing inflorescences (1-1.5 cm) | 7.58267 | 8.37112 | 7.92581 | 9.62142 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.83868 | 3.56296 | 2.32198 | 4.66487 |
NOD | Developing tillers at six leaf stage, 3rd internode | 3.99504 | 4.91142 | 4.82491 | 19.5821 |
CAR5 | Developing grain, bracts removed (5 DPA) | 4.45443 | 4.5151 | 4.38735 | 4.85503 |
CAR15 | Developing grain, bracts removed (15 DPA) | 2.29337 | 1.77822 | 2.07919 | 5.03395 |
CDS Structure of MLOC_20816
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_20816.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os12g38730.1 |
+2 |
0.0 |
649 |
439/640 (69%) |
13112.m03997 protein expressed protein |
TAIR PP10 |
AT5G61040.1 |
+2 |
7e-31 |
129 |
151/510 (30%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24562431-24564395 REVERSE LENGTH=590 |