MLOC_20816 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.459495.329215.200585.81394
LEAShoots from the seedlings (10 cm shoot stage)15.490425.059621.647220.3388
INF1Young developing inflorescences (5mm)7.046776.31677.486836.32787
INF2Developing inflorescences (1-1.5 cm)7.582678.371127.925819.62142
ROORoots from the seedlings (10 cm shoot stage)1.838683.562962.321984.66487
NODDeveloping tillers at six leaf stage, 3rd internode3.995044.911424.8249119.5821
CAR5Developing grain, bracts removed (5 DPA)4.454434.51514.387354.85503
CAR15Developing grain, bracts removed (15 DPA)2.293371.778222.079195.03395



CDS Structure of MLOC_20816






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20816.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369307NoneNoneNoneNone
MLOC_20816.3CUST_1921_PI427708080AvailableAvailablecontig_1591909 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g38730.1 +2 0.0 649 439/640 (69%) 13112.m03997 protein expressed protein
TAIR PP10 AT5G61040.1 +2 7e-31 129 151/510 (30%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24562431-24564395 REVERSE LENGTH=590