MLOC_20784 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains47.427353.551362.467261.4866
LEAShoots from the seedlings (10 cm shoot stage)40.616552.914655.195748.7055
INF1Young developing inflorescences (5mm)9.017636.531218.207287.3519
INF2Developing inflorescences (1-1.5 cm)15.908710.911515.386115.8609
ROORoots from the seedlings (10 cm shoot stage)89.823170.913373.9291104.13
NODDeveloping tillers at six leaf stage, 3rd internode18.948314.72913.440558.2507
CAR5Developing grain, bracts removed (5 DPA)25.364725.834124.990726.8939
CAR15Developing grain, bracts removed (15 DPA)4.64345.321014.6538112.1461



CDS Structure of MLOC_20784






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20784.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252700.1NoneNoneNoneNone
MLOC_20784.1CUST_1918_PI427708080AvailableAvailablecontig_1591802 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g55410.1 +1 0.0 947 478/527 (91%) 13104.m05744 protein FGGY family of carbohydrate kinases, putative, expressed
TAIR PP10 AT1G80460.1 +1 0.0 781 397/528 (75%) | Symbols: NHO1, GLI1 | Actin-like ATPase superfamily protein | chr1:30246960-30249055 REVERSE LENGTH=522