MLOC_20767 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.25846.242476.926925.93557
LEAShoots from the seedlings (10 cm shoot stage)7.220974.552445.860064.21334
INF1Young developing inflorescences (5mm)8.8004710.01610.40176.28528
INF2Developing inflorescences (1-1.5 cm)9.602088.717218.57597.58083
ROORoots from the seedlings (10 cm shoot stage)6.139686.685417.682846.00849
NODDeveloping tillers at six leaf stage, 3rd internode5.715298.295111.362422.4301
CAR5Developing grain, bracts removed (5 DPA)7.505917.572917.945175.40733
CAR15Developing grain, bracts removed (15 DPA)3.809033.883983.783366.56473



CDS Structure of MLOC_20767






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20767.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20767.2CUST_11670_PI427708083AvailableAvailablecontig_159171 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g45480.4 +1 5e-42 153 72/78 (92%) 13102.m12433 protein nucleic acid binding protein, putative, expressed
TAIR PP10 AT5G51980.1 +1 7e-30 121 52/71 (73%) Transducin/WD40 repeat-like superfamily protein | chr5:21113650-21115902 REVERSE LENGTH=437