MLOC_20763 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8820560.7604850.8009220.929824
LEAShoots from the seedlings (10 cm shoot stage)0.4832330.9407851.160741.06857
INF1Young developing inflorescences (5mm)0.542793.166110.9915811.4848
INF2Developing inflorescences (1-1.5 cm)0.4424461.1826300.981692
ROORoots from the seedlings (10 cm shoot stage)01.074380.9216421.80962
NODDeveloping tillers at six leaf stage, 3rd internode00.18526600.770531
CAR5Developing grain, bracts removed (5 DPA)0.5446990.2434620.8860650.702349
CAR15Developing grain, bracts removed (15 DPA)0.274912002.29771



CDS Structure of MLOC_20763






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20763.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20763.1CUST_2978_PI427708083AvailableAvailablecontig_159169 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g46760.2 +1 2e-42 142 67/79 (85%) 13107.m04947 protein RNA recognition motif containing protein, putative, expressed
TAIR PP10 AT3G56510.2 +1 2e-26 100 48/86 (56%) RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:20944348-20946235 REVERSE LENGTH=257