MLOC_20759 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.372260.6466490.9004531.00646
LEAShoots from the seedlings (10 cm shoot stage)0.40950.619880.930290.636312
INF1Young developing inflorescences (5mm)0.1169750.2366550.1810420.186011
INF2Developing inflorescences (1-1.5 cm)0.2141720.1783630.1799840.247934
ROORoots from the seedlings (10 cm shoot stage)0.478230.5171440.6551670.754898
NODDeveloping tillers at six leaf stage, 3rd internode9.704289.130469.6841232.5392
CAR5Developing grain, bracts removed (5 DPA)9.197757.98028.775149.84343
CAR15Developing grain, bracts removed (15 DPA)1.764342.612711.835455.88149



CDS Structure of MLOC_20759






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20759.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20759.1CUST_9908_PI427708080AvailableAvailablecontig_159168 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g16900.2 +1 0.0 664 329/362 (91%) 13101.m01894 protein dehydrogenase, putative, expressed
TAIR PP10 AT5G03290.1 +1 0.0 588 288/338 (85%) | Symbols: IDH-V | isocitrate dehydrogenase V | chr5:794043-795939 FORWARD LENGTH=374